Welcome to the Education Resources page!
Here you will find searchable resources that support educators and instructors teaching microbiome sciences, and individuals new to microbiome research and analyses. Our vision for the page is to provide entry points for microbiome experiments, data, analyses, and past workshops.
To navigate through the resources, filter the content using Categories and Tags.
For example, you are looking for a platform with a graphical user interface. You can search the Categories of ‘Graphical User Interface’ and enter ‘Platform’ in the Search bar to filter through the list and display GUI platforms like Geneious, Nephele, KBase, and Cyverse.
The Carpentries
Resources to learn foundational coding and data science through workshops and lessons on Software Carpentry, Data Carpentry, and Library Carpentry.
Bioinformatics pipeline for processing and analysis of amplicon sequence data (16S rRNA genes, ITS etc).
QIIME 2 Forum
Data Science in Practice
Data Science in Practice is an open set of materials for learning introductory data science.
This website is a public version of the Data Science in Practice course, taught as COGS 108 at UC San Diego.
If you are in the COGS108 class at UC San Diego, this website is not the same as the materials and coursework for the class.
bioBakery
Huttenhower lab homepage
bioBakery
Software, documentation, and tutorials for microbial community profiling.
Mothur
Command line bioinformatics pipeline for processing and analysis of amplicon sequencing barcodes (16S rRNA genes, ITS etc.).
Tiny Earth
Mining soil for bacteria with antibiotic resistance capacity
SEA-PHAGES
SEA-PHAGES (Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science) is a two-semester, discovery-based undergraduate research course that begins with simple digging in the soil to find new viruses, but progresses through a variety of microbiology techniques and eventually to complex genome annotation and bioinformatic analyses.
Galaxy
Web-based GUI server for genomics and other bioinformatics processing and analyses.
CyVerse
Cloud-based data analysis platform with bioinformatics tools, data visualization, data exploration, and interactive analyses.