Welcome to the Microbiome
Centers Consortium (MCC)

All Microbes. All the time.

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  • Mass Spec Data Center

    Compiles, evaluates, correlates and measures Standard Reference Data and develops and disseminates associated electronic databases and analysis software for chemical identification and quality control for (a) electron ionization mass spectra and associated retention properties by the technique of gas chromatography/mass spectrometry, (b) reference tandem mass spectra of ‘small molecules’ generated by electrospray and MALDI mass…

  • Mothur

    Command line bioinformatics pipeline for processing and analysis of amplicon sequencing barcodes (16S rRNA genes, ITS etc.).

  • R (Studio)

    Statistics/graphing/modeling/command line interface with capability to create markdown files showing workflow.

  • R Studio Cloud

    Cloud based version of statistics/graphing/modeling/command line interface with capability to create markdown files showing workflow.

  • MGnify

    Submit, analyse, discover and compare microbiome data

  • IMG/M’s GOLD (Genomes Online Database)

    Resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.

  • Metabolomics Standards Initiative

    Community-agreed reporting standards for metabolomics data.

  • ENA/EBI

    Comprehensive record of the world’s nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation

  • Silva/ARB

    a comprehensive, quality-controlled web resource for up-to-date aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota

  • RDP

    quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools to the scientific community